Publications
A linear algebra approach to fast DNA mixture analysis using GPUs
Summary
Summary
Analysis of DNA samples is an important step in forensics, and the speed of analysis can impact investigations. Comparison of DNA sequences is based on the analysis of short tandem repeats (STRs), which are short DNA sequences of 2-5 base pairs. Current forensics approaches use 20 STR loci for analysis...
Benchmarking data analysis and machine learning applications on the Intel KNL many-core processor
Summary
Summary
Knights Landing (KNL) is the code name for the second-generation Intel Xeon Phi product family. KNL has generated significant interest in the data analysis and machine learning communities because its new many-core architecture targets both of these workloads. The KNL many-core vector processor design enables it to exploit much higher...
Static graph challenge: subgraph isomorphism
Summary
Summary
The rise of graph analytic systems has created a need for ways to measure and compare the capabilities of these systems. Graph analytics present unique scalability difficulties. The machine learning, high performance computing, and visual analytics communities have wrestled with these difficulties for decades and developed methodologies for creating challenges...
Performance measurements of supercomputing and cloud storage solutions
Summary
Summary
Increasing amounts of data from varied sources, particularly in the fields of machine learning and graph analytics, are causing storage requirements to grow rapidly. A variety of technologies exist for storing and sharing these data, ranging from parallel file systems used by supercomputers to distributed block storage systems found in...
Implicitly-defined neural networks for sequence labeling
Summary
Summary
In this work, we propose a novel, implicitly defined neural network architecture and describe a method to compute its components. The proposed architecture forgoes the causality assumption previously used to formulate recurrent neural networks and allow the hidden states of the network to coupled together, allowing potential improvement on problems...
Automated provenance analytics: a regular grammar based approach with applications in security
Summary
Summary
Provenance collection techniques have been carefully studied in the literature, and there are now several systems to automatically capture provenance data. However, the analysis of provenance data is often left "as an exercise for the reader". The provenance community needs tools that allow users to quickly sort through large volumes...
SoK: cryptographically protected database search
Summary
Summary
Protected database search systems cryptographically isolate the roles of reading from, writing to, and administering the database. This separation limits unnecessary administrator access and protects data in the case of system breaches. Since protected search was introduced in 2000, the area has grown rapidly, systems are offered by academia, start-ups...
Fabrication security and trust of domain-specific ASIC processors
Summary
Summary
Application specific integrated circuits (ASICs) are commonly used to implement high-performance signal-processing systems for high-volume applications, but their high development costs and inflexible nature make ASICs inappropriate for algorithm development and low-volume DoD applications. In addition, the intellectual property (IP) embedded in the ASIC is at risk when fabricated in...
Twitter language identification of similar languages and dialects without ground truth
Summary
Summary
We present a new method to bootstrap filter Twitter language ID labels in our dataset for automatic language identification (LID). Our method combines geolocation, original Twitter LID labels, and Amazon Mechanical Turk to resolve missing and unreliable labels. We are the first to compare LID classification performance using the MIRA...
Bounded-collusion attribute-based encryption from minimal assumptions
Summary
Summary
Attribute-based encryption (ABE) enables encryption of messages under access policies so that only users with attributes satisfying the policy can decrypt the ciphertext. In standard ABE, an arbitrary number of colluding users, each without an authorized attribute set, cannot decrypt the ciphertext. However, all existing ABE schemes rely on concrete...